Adjust report settings to only include CPONT errors
With the current settings, robot is producing the report file src/ontology/reports/cpont.owl-obo-report.tsv that contains the following errors along with a bunch of warnings.
| Level | Rule Name | Subject | Property | Value | Subject ID |
|---|---|---|---|---|---|
| ERROR | duplicate_definition | Urinary bladder inflammation | definition | Inflammation of the urinary bladder. | HP_0100577 |
| ERROR | duplicate_definition | cystitis | definition | Inflammation of the urinary bladder. | MONDO_0006032 |
| ERROR | duplicate_definition | Urethritis | definition | Inflammation of the urethra. | HP_0500006 |
| ERROR | duplicate_definition | urethritis | definition | Inflammation of the urethra. | MONDO_0005297 |
| ERROR | duplicate_definition | Iritis | definition | Inflammation of the iris. | HP_0001101 |
| ERROR | duplicate_definition | iritis | definition | Inflammation of the iris. | MONDO_0006814 |
| ERROR | duplicate_label | dementia | rdfs:label | dementia | MONDO_0001627 |
| ERROR | duplicate_label | dementia | rdfs:label | dementia | NBO_0000268 |
These errors are the result of the same term being in more than 1 of the ontologies and not CPONT errors. Change the report settings in cpont-odk.yaml and profile.txt to only report on errors in the CPONT term namespace (https://w3id.org/cpont/vocab).