COA instrument/phenotype mapping

Create a hierarchy within CPONT to capture COA instruments, COA items and corresponding phenotypes.

• Create a class called COA instrument where each COA instrument will be a named instance of that instrument

• There will be a class called COA element/item

  • Object property to link to instrument will be part_of

  • Each question (or group of questions) will be an instance of COA element

    • Can form hierarchies using part_of relationships at instance level

  • Create instance level identifier for each question

    • This should be in a different repository (private repo)
    • Can assign an ID range for instances

  • As you go through COAs, give everything a unique instance ID

    • Add some relationship to indicate the equivalence

  • Spreadsheet for ontology:

    1. Instance ID
    2. Short label
    3. Phenotype it is associated it to
    4. This will ingested into KG

  • Spreadsheet - creating instances without relationships to anything else

    1. Instance ID
    2. Label
    3. Def
    4. Allowed values